Metagenomic Analysis of the Ferret Fecal Viral Flora
Identifieur interne : 001901 ( Main/Exploration ); précédent : 001900; suivant : 001902Metagenomic Analysis of the Ferret Fecal Viral Flora
Auteurs : Saskia L. Smits [Pays-Bas] ; V. Stalin Raj [Pays-Bas] ; Minoushka D. Oduber [Pays-Bas] ; Claudia M. E. Schapendonk [Pays-Bas] ; Rogier Bodewes [Pays-Bas] ; Lisette Provacia [Pays-Bas] ; Koert J. Stittelaar [Pays-Bas] ; Albert D. M. E. Osterhaus [Pays-Bas] ; Bart L. Haagmans [Pays-Bas]Source :
- PLoS ONE [ 1932-6203 ] ; 2013.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- genetics : Genome, Viral, Viruses.
- virology : Feces, Ferrets.
- Amino Acid Sequence, Animals, Base Sequence, Genetic Variation, Humans, Metagenomics, Molecular Sequence Data, Phylogeny, Sequence Homology, Amino Acid.
Abstract
Ferrets are widely used as a small animal model for a number of viral infections, including influenza A virus and SARS coronavirus. To further analyze the microbiological status of ferrets, their fecal viral flora was studied using a metagenomics approach. Novel viruses from the families
Url:
DOI: 10.1371/journal.pone.0071595
PubMed: 23977082
PubMed Central: 3748082
Affiliations:
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Smits</name><affiliation wicri:level="3"><nlm:aff id="aff1"><addr-line>Department of Viroscience, Erasmus Medical Center, Rotterdam, The Netherlands</addr-line></nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Department of Viroscience, Erasmus Medical Center, Rotterdam</wicri:regionArea><placeName><settlement type="city">Rotterdam</settlement><region nuts="2" type="province">Hollande-Méridionale</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="aff2"><addr-line>Viroclinics Biosciences BV, Rotterdam, The Netherlands</addr-line></nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Viroclinics Biosciences BV, Rotterdam</wicri:regionArea><placeName><settlement type="city">Rotterdam</settlement><region nuts="2" type="province">Hollande-Méridionale</region></placeName></affiliation></author><author><name sortKey="Raj, V Stalin" sort="Raj, V Stalin" uniqKey="Raj V" first="V. Stalin" last="Raj">V. Stalin Raj</name><affiliation wicri:level="3"><nlm:aff id="aff1"><addr-line>Department of Viroscience, Erasmus Medical Center, Rotterdam, The Netherlands</addr-line></nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Department of Viroscience, Erasmus Medical Center, Rotterdam</wicri:regionArea><placeName><settlement type="city">Rotterdam</settlement><region nuts="2" type="province">Hollande-Méridionale</region></placeName></affiliation></author><author><name sortKey="Oduber, Minoushka D" sort="Oduber, Minoushka D" uniqKey="Oduber M" first="Minoushka D." last="Oduber">Minoushka D. Oduber</name><affiliation wicri:level="3"><nlm:aff id="aff1"><addr-line>Department of Viroscience, Erasmus Medical Center, Rotterdam, The Netherlands</addr-line></nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Department of Viroscience, Erasmus Medical Center, Rotterdam</wicri:regionArea><placeName><settlement type="city">Rotterdam</settlement><region nuts="2" type="province">Hollande-Méridionale</region></placeName></affiliation></author><author><name sortKey="Schapendonk, Claudia M E" sort="Schapendonk, Claudia M E" uniqKey="Schapendonk C" first="Claudia M. E." last="Schapendonk">Claudia M. E. Schapendonk</name><affiliation wicri:level="3"><nlm:aff id="aff1"><addr-line>Department of Viroscience, Erasmus Medical Center, Rotterdam, The Netherlands</addr-line></nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Department of Viroscience, Erasmus Medical Center, Rotterdam</wicri:regionArea><placeName><settlement type="city">Rotterdam</settlement><region nuts="2" type="province">Hollande-Méridionale</region></placeName></affiliation></author><author><name sortKey="Bodewes, Rogier" sort="Bodewes, Rogier" uniqKey="Bodewes R" first="Rogier" last="Bodewes">Rogier Bodewes</name><affiliation wicri:level="3"><nlm:aff id="aff1"><addr-line>Department of Viroscience, Erasmus Medical Center, Rotterdam, The Netherlands</addr-line></nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Department of Viroscience, Erasmus Medical Center, Rotterdam</wicri:regionArea><placeName><settlement type="city">Rotterdam</settlement><region nuts="2" type="province">Hollande-Méridionale</region></placeName></affiliation></author><author><name sortKey="Provacia, Lisette" sort="Provacia, Lisette" uniqKey="Provacia L" first="Lisette" last="Provacia">Lisette Provacia</name><affiliation wicri:level="3"><nlm:aff id="aff1"><addr-line>Department of Viroscience, Erasmus Medical Center, Rotterdam, The Netherlands</addr-line></nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Department of Viroscience, Erasmus Medical Center, Rotterdam</wicri:regionArea><placeName><settlement type="city">Rotterdam</settlement><region nuts="2" type="province">Hollande-Méridionale</region></placeName></affiliation></author><author><name sortKey="Stittelaar, Koert J" sort="Stittelaar, Koert J" uniqKey="Stittelaar K" first="Koert J." last="Stittelaar">Koert J. Stittelaar</name><affiliation wicri:level="3"><nlm:aff id="aff2"><addr-line>Viroclinics Biosciences BV, Rotterdam, The Netherlands</addr-line></nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Viroclinics Biosciences BV, Rotterdam</wicri:regionArea><placeName><settlement type="city">Rotterdam</settlement><region nuts="2" type="province">Hollande-Méridionale</region></placeName></affiliation></author><author><name sortKey="Osterhaus, Albert D M E" sort="Osterhaus, Albert D M E" uniqKey="Osterhaus A" first="Albert D. M. E." last="Osterhaus">Albert D. M. E. Osterhaus</name><affiliation wicri:level="3"><nlm:aff id="aff1"><addr-line>Department of Viroscience, Erasmus Medical Center, Rotterdam, The Netherlands</addr-line></nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Department of Viroscience, Erasmus Medical Center, Rotterdam</wicri:regionArea><placeName><settlement type="city">Rotterdam</settlement><region nuts="2" type="province">Hollande-Méridionale</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="aff2"><addr-line>Viroclinics Biosciences BV, Rotterdam, The Netherlands</addr-line></nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Viroclinics Biosciences BV, Rotterdam</wicri:regionArea><placeName><settlement type="city">Rotterdam</settlement><region nuts="2" type="province">Hollande-Méridionale</region></placeName></affiliation></author><author><name sortKey="Haagmans, Bart L" sort="Haagmans, Bart L" uniqKey="Haagmans B" first="Bart L." last="Haagmans">Bart L. Haagmans</name><affiliation wicri:level="3"><nlm:aff id="aff1"><addr-line>Department of Viroscience, Erasmus Medical Center, Rotterdam, The Netherlands</addr-line></nlm:aff><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Department of Viroscience, Erasmus Medical Center, Rotterdam</wicri:regionArea><placeName><settlement type="city">Rotterdam</settlement><region nuts="2" type="province">Hollande-Méridionale</region></placeName></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence</term><term>Animals</term><term>Base Sequence</term><term>Feces (virology)</term><term>Ferrets (virology)</term><term>Genetic Variation</term><term>Genome, Viral (genetics)</term><term>Humans</term><term>Metagenomics</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Sequence Homology, Amino Acid</term><term>Viruses (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux</term><term>Données de séquences moléculaires</term><term>Furets (virologie)</term><term>Fèces (virologie)</term><term>Génome viral (génétique)</term><term>Humains</term><term>Métagénomique</term><term>Phylogénie</term><term>Similitude de séquences d'acides aminés</term><term>Séquence d'acides aminés</term><term>Séquence nucléotidique</term><term>Variation génétique</term><term>Virus (génétique)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Genome, Viral</term><term>Viruses</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Génome viral</term><term>Virus</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Furets</term><term>Fèces</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Feces</term><term>Ferrets</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term><term>Animals</term><term>Base Sequence</term><term>Genetic Variation</term><term>Humans</term><term>Metagenomics</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Sequence Homology, Amino Acid</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Données de séquences moléculaires</term><term>Humains</term><term>Métagénomique</term><term>Phylogénie</term><term>Similitude de séquences d'acides aminés</term><term>Séquence d'acides aminés</term><term>Séquence nucléotidique</term><term>Variation génétique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Ferrets are widely used as a small animal model for a number of viral infections, including influenza A virus and SARS coronavirus. To further analyze the microbiological status of ferrets, their fecal viral flora was studied using a metagenomics approach. Novel viruses from the families <italic>Picorna-, Papilloma-,</italic> and <italic>Anelloviridae</italic> as well as known viruses from the families <italic>Astro-, Corona-, Parvo-</italic>, and <italic>Hepeviridae</italic> were identified in different ferret cohorts. Ferret kobu- and hepatitis E virus were mainly present in human household ferrets, whereas coronaviruses were found both in household as well as farm ferrets. Our studies illuminate the viral diversity found in ferrets and provide tools to prescreen for newly identified viruses that potentially could influence disease outcome of experimental virus infections in ferrets.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Kuiken, T" uniqKey="Kuiken T">T Kuiken</name></author><author><name sortKey="Leighton, Fa" uniqKey="Leighton F">FA Leighton</name></author><author><name sortKey="Fouchier, Ra" uniqKey="Fouchier R">RA Fouchier</name></author><author><name sortKey="Leduc, Jw" uniqKey="Leduc J">JW LeDuc</name></author><author><name sortKey="Peiris, Js" uniqKey="Peiris J">JS Peiris</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Taylor, Lh" uniqKey="Taylor L">LH Taylor</name></author><author><name sortKey="Latham, Sm" uniqKey="Latham S">SM Latham</name></author><author><name sortKey="Woolhouse, Me" uniqKey="Woolhouse M">ME 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sortKey="Lindberg, Am" uniqKey="Lindberg A">AM Lindberg</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Harvala, H" uniqKey="Harvala H">H Harvala</name></author><author><name sortKey="Simmonds, P" uniqKey="Simmonds P">P Simmonds</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Biagini, P" uniqKey="Biagini P">P Biagini</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Pays-Bas</li></country><region><li>Hollande-Méridionale</li></region><settlement><li>Rotterdam</li></settlement></list><tree><country name="Pays-Bas"><region name="Hollande-Méridionale"><name sortKey="Smits, Saskia L" sort="Smits, Saskia L" uniqKey="Smits S" first="Saskia L." last="Smits">Saskia L. Smits</name></region><name sortKey="Bodewes, Rogier" sort="Bodewes, Rogier" uniqKey="Bodewes R" first="Rogier" last="Bodewes">Rogier Bodewes</name><name sortKey="Haagmans, Bart L" sort="Haagmans, Bart L" uniqKey="Haagmans B" first="Bart L." last="Haagmans">Bart L. Haagmans</name><name sortKey="Oduber, Minoushka D" sort="Oduber, Minoushka D" uniqKey="Oduber M" first="Minoushka D." last="Oduber">Minoushka D. Oduber</name><name sortKey="Osterhaus, Albert D M E" sort="Osterhaus, Albert D M E" uniqKey="Osterhaus A" first="Albert D. M. E." last="Osterhaus">Albert D. M. E. Osterhaus</name><name sortKey="Osterhaus, Albert D M E" sort="Osterhaus, Albert D M E" uniqKey="Osterhaus A" first="Albert D. M. E." last="Osterhaus">Albert D. M. E. Osterhaus</name><name sortKey="Provacia, Lisette" sort="Provacia, Lisette" uniqKey="Provacia L" first="Lisette" last="Provacia">Lisette Provacia</name><name sortKey="Raj, V Stalin" sort="Raj, V Stalin" uniqKey="Raj V" first="V. Stalin" last="Raj">V. Stalin Raj</name><name sortKey="Schapendonk, Claudia M E" sort="Schapendonk, Claudia M E" uniqKey="Schapendonk C" first="Claudia M. E." last="Schapendonk">Claudia M. E. Schapendonk</name><name sortKey="Smits, Saskia L" sort="Smits, Saskia L" uniqKey="Smits S" first="Saskia L." last="Smits">Saskia L. Smits</name><name sortKey="Stittelaar, Koert J" sort="Stittelaar, Koert J" uniqKey="Stittelaar K" first="Koert J." last="Stittelaar">Koert J. Stittelaar</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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